Fuzhou University began to set up a graduate school in 2005. At present, there are more than 8,400 graduate students. It is the only pilot university of comprehensive reform of national professional degree postgraduate education in Fujian Province and an innovative university of national engineering postgraduate education. The Graduate School of Fuzhou University was formally established in June 20 12, which will build a broader platform for promoting the construction of Fuzhou University's entrepreneurial southeast strong school and promoting degree and postgraduate education at a higher starting point.

There are 18 colleges and units that train graduate students: School of Mathematics and Computer, School of Physics and Information, School of Chemistry and Chemical Engineering, School of Civil Engineering, Zijin Mining College, School of Mechanical Engineering and Automation, School of Materials Science and Engineering, School of Biological Science and Engineering, School of Electrical Engineering and Automation, School of Environment and Resources, School of Management, School of Law, School of Humanities and Social Sciences, School of Public Administration, School of Foreign Languages, School of Software. National Engineering Research Center of Fertilizer Catalyst 1 each, Engineering Research Center of Ministry of Education 1 each, National Key Laboratory Cultivation Base 1 each jointly built by provinces, and 3 key laboratories jointly built by Ministry of Education.