Inner Mongolia Agricultural University has animal science college, veterinary college, agricultural college, forestry college, ecological environment college, electromechanical engineering college, water conservancy and civil engineering college, material science and art design college, economic management college, food science and engineering college, computer and information engineering college, life science college, humanities and social sciences college.

There are 22 colleges (departments) such as Foreign Languages College, Science College, Energy and Transportation Engineering College, Marxism College, International Education College, Continuing Education College, Vocational and Technical College and Physical Education Department, among which Vocational and Technical College of Inner Mongolia Agricultural University is the construction unit of national higher vocational education demonstration colleges.