Nanzan University has humanities departments (Christianity, human culture, human psychology and Japanese culture), foreign languages departments (British and American disciplines, Spanish and Latin American disciplines, French disciplines, German disciplines and Asian disciplines), economics departments (economics disciplines), management departments (business disciplines), law departments (law disciplines), comprehensive policy departments (comprehensive policy disciplines) and information engineering departments (software engineering disciplines).
The school-running policy of Nanzan University is "personal strength moves towards world strength", developing towards "world-recognized university" and "world-talented university", and constantly implementing reforms and strengthening self-improvement.