In patents, you are generally not allowed to have information that outsiders cannot know. If this happens, the examiner will send a notice saying that your instructions are not fully disclosed, and then reject your patent application for this reason.

I don't understand one thing. Are there any key technologies in your thesis?

If you don't intend to write this secret recipe in your patent application, it will be made public in your paper, and it will not be protected if it is made public.